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Publications


    2009 Top ˆ

  1. S. Tan and I.A. Kakadiaris, "Kernel active contour," in Proc. 12th IEEE International Conference on Computer Vision, Kyoto, Japan, Sep. 29 -- Oct. 2 2009.

    2. 2008 Top ˆ

  2. B.E. Losavio, Y. Liang, A. Santamaria-Pang, I.A. Kakadiaris, C.M. Colbert, and P. Saggau, "Live neuron morphology automatically reconstructed from multiphoton and confocal imaging data," Journal of Neurophysiology, vol. 100, pp. 2422 -- 2429, 2008.
  3. A. Santamaria-Pang, T.S. Bildea, S. Tan, and I.A. Kakadiaris, "Denoising for 3-D photon-limited imaging data using nonseparable filterbanks," IEEE Transactions on Image Processing, vol. 17, no. 12, pp. 2312 -- 2323, 2008.
  4. I.A. Kakadiaris, A. Santamaria-Pang, C. Colbert, and P. Saggau, "Automatic 3-D morphological reconstruction of living neurons" in Microscopic Image Analysis for Life Science Applications, J. Rittscher, R. Machiraju, and S.T.C. Wong, Eds. Artech House, Incorporated, 2008, pp. 389 -- 399.
  5. S. Tan, L. Jiao, and I.A. Kakadiaris, "Wavelet-based bayesian image estimation: From marginal and bivariate prior models to multivariate prior models," IEEE Transactions on Image Processing, vol. 17, no. 4, pp. 479 -- 481, 2008.

    6. 2007 Top ˆ

  6. A. Santamaria-Pang, C.M. Colbert, P. Saggau, and I.A. Kakadiaris, "Automatic centerline extraction of irregular tubular structures using probability volumes from confocal imaging," in Proc. Medical Image Computing and Computer-Assisted Intervention, Brisbane, Australia, Oct. 29 - Nov. 2, 2007.
  7. A. Santamaria-Pang, C.M. Colbert, B. Losavio, P. Saggau, and I.A. Kakadiaris, "Automatic morphological reconstruction of neurons from optical images," in Proc. Second International Workshop in Microscopic Image Analysis with Applications in Biology, Piscataway, NJ, Sep. 21, 2007.

    8. 2006 Top ˆ

  8. A. Santamaria-Pang, T.S. Bildea, C. Colbert, P. Saggau, and I.A. Kakadiaris, "Towards segmentation of irregular tubular structures in 3D confocal microscope images", in Proc. MICCAI Workshop in Microscopic Image Analysis and Applications in Biology (MIAAB), Copenhagen, Denmark, Oct. 1-6, 2006.
  9. B.E. Losavio, G.D. Reddy, C.M. Colbert, I.A. Kakadiaris, and P. Saggau, "Combining optical imaging and computational modeling to analyze structure and function of living neurons," in Proc. 28th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, New York, NY, Aug. 30 - Sep. 3, 2006, pp. 668 -- 670.
  10. J.A. Velazquez-Muriel, M. Valle, A. Santamaria-Pang, I.A. Kakadiaris, and J.-M. Carazo, "Flexible fitting in 3D-EM guided by the structural variability of protein superfamilies," Structure, vol. 14, no. 7, pp. 1115 -- 1126, 2006.
  11. L. Shen, M. Papadakis, I.A. Kakadiaris, I. Konstantinidis, D.J. Kouri, and D.K. Hoffman, "Image denoising using a tight frame," IEEE Transactions on Image Processing, vol. 15, no. 5, pp. 1254 -- 1263, 2006.
  12. S. Urban, S.M. O'Malley, B. Walsh, A. Santamaria-Pang, P. Saggau, C. Colbert, and I.A. Kakadiaris, "Automatic reconstruction of dendrite morphology from optical section stacks," in Proc. 2nd International Workshop on Computer Vision Approaches to Medical Image Analysis, Graz, Austria, May 7-13 2006, pp. 190 -- 201.
  13. A. Santamaria-Pang, T.S. Bildea, I. Konstantinidis, and I.A. Kakadiaris, "Adaptive frames-based denoising of confocal microscopy data," in Proc. IEEE International Conference on Acoustics, Speech, and Signal Processing, vol. 2, Toulouse, France, May 14-19 2006, p. II.

    14. 2005 Top ˆ

  14. I. Konstantinidis, A. Santamaria-Pang, and I.A. Kakadiaris, "Frames-based denoising in 3D confocal microscopy imaging," in Proc. 27th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Shanghai, China, Sep. 1-4, 2005, pp. 290 -- 293.
  15. L. Shen, M. Papadakis, I.A. Kakadiaris, I. Konstantinidis, D.J. Kouri, and D.K. Hoffman, "Image denoising using a tight frame," in Proc. IEEE International Conference on Acoustics, Speech, and Signal Processing, vol. II, Philadelphia, PA, Mar. 18-23 2005, pp. 641 -- 644.

    16. 2004 Top ˆ

  16. L. Shen, J. Yang, M. Papadakis, I.A. Kakadiaris, D.J. Kouri, and D.K. Hoffman, "Orthonormal wavelets arising from HDAFs," Contemporary Mathematics, AMS, vol. 345, pp. 317 -- 342, 2004.
  17. S. Urban, S. O'Malley, B. Walsh, B. Losavio, T. Hoogland, P. Saggau, C. Colbert, and I.A. Kakadiaris, "Automatic reconstruction of dendrite morphologies from confocal images," in Proc. Texas Systems Day, Houston, TX, Nov. 13 2004, p. 25.
  18. C. Uehara, C.M. Colbert, P. Saggau and I.A. Kakadiaris, "Towards automatic reconstruction of dendrite morphology from live neurons," in Proc. 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, vol. 3, San Fransisco, CA, Sep. 1-5, 2004, pp. 1798 -- 1801.
  19. I.A. Kakadiaris, L. Shen, M. Papadakis, I. Konstantinidis, D.J. Kouri and D.K. Hoffman, "Surface denoising using a tight frame," in Proc. Computer Graphics International, Crete, Greece, Jun. 16-19, 2004, pp. 553 -- 560.

    20. 2003 Top ˆ

  20. M. Papadakis, G. Gogoshin, I.A. Kakadiaris, D.J. Kouri and D.K. Hoffman, "Non-separable radial frame multiresolution analysis in multidimensions," Numerical Functional Analysis and Optimization, vol. 24, pp. 907 -- 928, 2003.
  21. L. Shen, J. Yang, M. Papadakis, I.A. Kakadiaris, D.J. Kouri, and D.K. Hoffman, "On the smoothness of the modified hermite distributed approximating functional orthonormal wavelets," Applied and Computational Harmonic Analysis, vol. 15, no. 3, pp. 242 -- 254, 2003.